DOOSS: a tool for visual analysis of data overlaid on secondary structures
نویسندگان
چکیده
MOTIVATION DOOSS (Data Overlaid On Secondary Structures) is a tool for visualizing annotated secondary structures of large single-stranded nucleotide sequences (such as full-length virus genomes). The purpose of this tool is to assist investigators in evaluating the biological relevance of secondary structures within particular sequences. AVAILABILITY AND IMPLEMENTATION DOOSS is written in Java and is available from: http://dooss.computingforbiology.org CONTACT [email protected] SUPPLEMENTARY INFORMATION Supplementary data are available at Bioinformatics online.
منابع مشابه
Local Shape Analysis for Overlaid Data Structures
We present a shape analysis for programs that manipulate overlaid data structures which share sets of objects. The abstract domain contains Separation Logic formulas that (1) combine a per-object separating conjunction with a per-field separating conjunction and (2) constrain a set of variables interpreted as sets of objects. The definition of the abstract domain operators is based on a notion ...
متن کاملSecondary Structure Effects on the Acidity of Histidine and Lysine-Based Peptides Model; A Theoretical Study
In this study, the effect of the secondary structure of the protein on the acid strength of three structures of random (R), alpha helix (α) and beta sheet (b) were investigated theoretically. These structures are related to the cationic amino acids of histidine and lysine in the polypeptide chain of eight-glycine residue. Computational methods at the HF, B3LYP, X3LYP and M05-2X levels in t...
متن کاملRelation Between RNA Sequences, Structures, and Shapes via Variation Networks
Background: RNA plays key role in many aspects of biological processes and its tertiary structure is critical for its biological function. RNA secondary structure represents various significant portions of RNA tertiary structure. Since the biological function of RNA is concluded indirectly from its primary structure, it would be important to analyze the relations between the RNA sequences and t...
متن کاملThe Effect of Health Belief Model Education on Nutrition Behavior of Boys in Secondary Schools in Hamadan
Introduction: The Adolescents need healthy nutrition education more than any other groups. In present study, the effect of Health Belief Model education on nutrition behavior of secondary boy students was investigated. Methods: This pre and post test semi-experimental study with two groups was carried out on 120 boys of secondary schools in Hamadan. A randomized cluster sampling method and ...
متن کاملProgram Analysis for Overlaid Data Structures
We call a data structure overlaid, if a node in the structure includes links for multiple data structures and these links are intended to be used at the same time. In this paper, we present a static program analysis for overlaid data structures. Our analysis implements two main ideas. The first is to run multiple sub-analyses that track information about non-overlaid data structures, such as li...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید
ثبت ناماگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید
ورودعنوان ژورنال:
- Bioinformatics
دوره 29 2 شماره
صفحات -
تاریخ انتشار 2013